Protein Sequence Structure Visualization

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References:

Control Panel Protein Visualization: HIV gp120






Currently highlighted: PDB file numbering   HXB2 numbering
Type postion numbers: (Example: 230-242, 315) Numbering system: HXB2 PDB file
Sequence View
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PDB file:

HXB2:

Seq1:
Seq2:
Seq3:
Seq4:

                                                                                   84    90       100       110       120       130                                                              195  200       210       220       230       240       250       260       270       280       290       300      309312     320        330       340       350   5 7 360       370       380       390    397 401      410       420       430       440       450       460  463    470       480       490
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-----------------------------------------------------------------------------------VVLENVTEHFNMWKNDMVEQMQEDIISLWDQSLKPCVKLTPLCVGAG----------------------------------------------------------------SCDTSVITQACPKISFEPIPIHYCAPAGFAILKCNDKTFNGKGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSDNFTNNAKTIIVQLKESVEINCTRPNQNTRKSIHI--GPGRAFYTTGEIIGDIRQAHCNISRAKWNDTLKQIVIKLREQFEN-KTIVFNHSSGGDPEIVMHSFNCGGEFFYCNSAQLFNSTWNN---NTEGSNNTEG-NTITLPCRIKQIINMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGINE--NGTEIFRPGGGDMRDNWRSELYKYKVVKIE----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

MRVKEKYQHLWRWGWRWGTMLLGMLMICSATEKLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNMWKNDMVEQMHEDIISLWDQSLKPCVKLTPLCVSLKCTDLKNDTNTNSSSGRMIMEKGEIKNCSFNISTSIRGKVQKEYAFFYKLDIIPIDNDTTSYKLTSCNTSVITQACPKVSFEPIPIHYCAPAGFAILKCNNKTFNGTGPCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSVNFTDNAKTIIVQLNTSVEINCTRPNNNTRKRIRIQRGPGRAFVTIGKIGNMRQAHCNISRAKWNNTLKQIASKLREQFGNN-KTIIFKQSSGGDPEIVTHSFNCGGEFFYCNSTQLFNSTWFNSTWSTEGSNNTEGSDTITLPCRIKQIINMWQKVGKAMYAPPISGQIRCSSNITGLLLTRDGGNSN--NESEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASMTLTVQARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLEQIWNHTTWMEWDREINNYTSLIHSLIEESQNQQEKNEQELLELDKWASLWNWFNITNWLWYIKLFIMIVGGLVGLRIVFAVLSIVNRVRQGYSPLSFQTHLPTPRGPDRPEGIEEEGGERDRDRSIRLVNGSLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRVIEVVQGACRAIRHIPRRIRQGLERILL

MRVRETKKNYWQW-WRRGMMLLGMLMICSATEQSWVTVYYGVPVWKEASTTLFCASDAKAVETEAHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPFCETKMCSNVDNATSDTNSTNSGWEKMAE-EIRNCSFNVTTNIGNKRQKEYALFNKLDVVPIDNTSYTLINCNTSVITQACPKISFEPIPIHYCTPAGFAILKCNDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIVIRSENFTNNAKTIIVQLNKTVVINCTRPNNNTRKGIHL--GPGRTVYATGGIIGNIRQAHCNISGAEWENTLKQIATKLGGQFKN-KTIAFNQSSGGDPEITMHSFNCGGEFFYCNTTQLFNSTW-TYTWNRNG-NGTNG--TITLPCRIKQIINRWQEVGRAMYAPPIQGQIRCSSNITGLLLTRDGGNNKGANHTEIFRPGGGNMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICPTAVPWNASWSNKSLDDIWHNMTWMQWEKEIDNYTDLIYSLIEESQNQQEKNEQELLQLDAWASLWNWFSITKWLRYIQLFIMIVGGLIGLRIVFAVFSIVNRVRQGYSPLSFQTRLPAQWGPDRPGGIEEEGGERDKDRSVRLVNGLLAIIWDDLRSLCLFSYHRLRDLLLIVTRVVELLGRRGWEVLKYLGNILQYWGQELKNSAVSLLNVTAIAVAEGTDRIIEVVQRLCRAILHIPVRIRQGLERALL
MRVRETKKNYWQW-WRRGMMLLGMLMICSATEQLWVTVYYGVPVWKDASTTLFCASDAKAVETEAHNVWATHACVPTDPNPQEVVLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLRCSSVNSTASDTNSTNSGWEKMEE-EIRNCSFNVTTNIGSKRQKEYALFNRLDVVPIDNTSYTLINCNTSVITQACPKISFEPIPIHYCTPAGFAILKCNDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLAEEEIIIRSENFTNNAKTIIVQLNKTVVINCTRPNNNTRKSIHL--GPGGTIYATGGIIGNIRQAHCNISGAEWENTLKQIATKLGGQFKN-KTIAFNQSSGGDPEIIMHSFNCGGEFFYCNTTQLFNSTW-AHTWNRNG-NGTNS--TITLPCRIKQIINRWQEVGKAMYAPPIQGQIRCSSNITGLLLTRDGGNNGTENNTEIFRPGGGNMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAIEAQQHMLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICPTAVPWNASWSNRSLDDIWHNMTWMQWEKEIDNYTDLIYSLIEESQNQQEKNEQELLQLDAWASLWNWFSITKWLRYIQLFIMIVGGLIGLRIVFAVLSIVNRARQGYSPLSFQTRLPDQRGPDRPGGIEEEGGERDKDRSVRLVNGLLAIIWDDLRSLCLFSYHRLRDLLLIVTRVVELLGRRGWEVLKYLGNILQYWSQELKNSAVSLLNATAIAVAEGTDRIIELVQRLCRAILHIPTRIRQGFERALL
MRVKGTRKSYRRL-WRWGTMLLGMLMICSAAEQLWVTVYYGVPVWKEANTTLFCASDAKAYKSEVHNVWATHACVPTDPNPQEVVLGNVTENFNMWKNNMVDQMHEDIISLWDQNLKPCVKLTPLCVTLHCTDLRNATNTTGNSSSGMEMEGG-EIKNCSFNITTSIRDKVQKEHALFYKFDIVPNDNTSYRLISCNTSVITQACPKVSFEPIPIHYCAPAGFALLKCNDKRFNGTGSCKNVSTVQCTHGIRPVVSTQLLLNGSLAEDEVVIRSANFTDNAKIIIVQLNNSVRIHCTRPNNNTRRSINI--GPGRAFYTTGDIIGDIRKAHCNLSKSDWNNALRQVARKLGEQFKN-KTINFTRSSGGDPEIAMHSFNCGGEFFYCNSTPLFNSTW-NSTKGSHN-STGNE--TITLQCIIKQIINLWQEVGKAMYAPPIKGQIKCSSNITGLLLTRDGGRNDTDNTTEIFRPGGGDMRDNWRSELYKYKVVRIEPLGVAPTKAKRRVVQREKRAVGIGALFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLGDQQLLGIWGCSGKLICTTAVPWNASWSNKSLDDIWDNMTWMQWDREISNYTSKIYQLIEKSQNQQEKNEQELLELDKWTNLWNWFKISNWLWYIRLFIMIVGGLVGLRIIFAVLSIVNRVRQGYPPLSFQTRFPAPRGPDRPEGIEEEGGERDRDRSGRLVDGFLALIWDDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEALKYWWNLLQYWSQELKNSAVSLLNATAIAVAEGTDRIIEVVQRAYRAILHIPRRIRQGLERLLL
MRVKEIRRNYQHL-WRWGTMLLGMLMICSAAEQLWVTVYYGVPVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVGLENVTENFNMWKNNMVEQMHEDIISLWDQSLKPCVKLTPLCVTLNCTDYLGNVTNTNTSSSGGTMEKG-EIKECSFNITTSIRDKVQKEYALFYKLDVVPDDNTSYRLISCNTSVITQACPKISFEPIPIHYCAPAGFAILKCKDKKFNGKGSCTNVSTVQCTHGIRPVVSTQLLLNGSLAEEEVVIRSENFTNNAKTIIVQLNESVVINCTRPNNNTRKSIHI--GPGRAFYTTGEIIGNIRQAHCNLSRAEWNKTLEQIVGKLREQFGN-KTIVFNQSSGGDPEIVTHSFNCGGEFFYCNTTQLFNSTW-TWNGTEGL-NNTEG--NITLPCRIKQIVNMWQEVGKAMYAPPIRGQIRCSSNITGLLLTRDGGNNGTENGTEIFRPGGGDMRDNWRSELYKYKVVKIEPLGVAPTRAKRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASITLTVQARLLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSLNEIWDNMTWMEWEREINNYTGLIYNLIEESQNQQEKNEQELLELDKWANLWTWFDITNWLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTRLPAPRGPDRPEGIEEEGGERDRDRSGPLVDGFLALIWVDLRSLCLFSYHRLRDLLLIVTRIVELLGRRGWEVLKIWWNLLQYWSQELKNSAVSLFNAIAIAVAEGTDRVIEALQRAYRAILHIPTRIRQGLERALL